Faculty Information, Institute for Chemical Research, Kyoto University   [ English | Japanese ]

MORI, Tomoya

Bioinformatics Center - Mathematical Bioinformatics -
(Laboratory in the (Laboratory in the School of Informatics))
Assistant Professor
Ph.D. Informatics
E-mail: tmori at kuicr.kyoto-u.ac.jp
Tel: 0774-38-3016
Fax: 0774-38-3022

Academic career
    2015.9 Graduated from Dr. Course, Kyoto University
    2015.9 Ph.D. Informatics, Kyoto University
    2015.10 JSPS Research Fellow, Bioinformatics Center, Institute for Chemical Research, Kyoto University
    2015.11 JSPS Research Fellow, Center for iPS Cell Research and Application, Kyoto University
    2016.4 Researcher, Center for iPS Cell Research and Application, Kyoto University
    2018.4 Assistant Professor, Bioinformatics Center, Institute for Chemical Research, Kyoto University
Research field
Current research
  1. Algorithms for comparing graph-structured data
  2. Modeling and simulation of signaling network using Boolean network
  3. Single-cell Transcriptome/Methylome analysis
Selected publications
  1. Liu L, Mori T, Zhao Y, Hayashida M, Akutsu T, Euler string-based compression of tree-structured data and its application to analysis of RNAs Current Bioinformatics 13(1), 25-33 (2018)
  2. Mori T, Yamane J, Kobayashi K, Taniyama N, Tano T, Fujibuchi W, Development of 3D tissue reconstruction method from single-cell RNA-seq data Genomics and Computational Biology 3(1), e53 (2017)
  3. Yamane J, Mori T, Taniyama N, Kobayashi K, Fujibuchi W, Development of enhanced reduced representation bisulfite sequencing method for single-cell methylome analysis Genomics and Computational Biology 3(2), e49 (2017)
  4. Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T, An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data Bioinformatics 33(2), 201-209 (2017)
  5. Cheng X, Mori T, Qiu Y, Ching W-K, Akutsu T, Exact identification of the structure of a probabilistic Boolean network from sample IEEE/ACM Transactions on Computational Biology and Bioinformatics 13(5), 1107-1116 (2016)
  6. Hasegawa T, Niida A, Mori T, Shimamura T, Yamaguchi R, Miyano S, Akutsu T, Imoto S, A likelihood-free filtering method via approximate Bayesian computation in evaluating biologival simulation models Computational Statistics and Data Analysis 94, 63-74 (2016)
  7. Mori T, Takasu A, Jansson J, Hwang J, Tamura T, Akutsu T, Similar subtree search using extended tree inclusion IEEE Transactions on Knowledge and Data Engineering 27(12), 3360-3373 (2015)
  8. Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E , Stochastic simulation of Boolean rxncon model: towards quantitative analysis of large signaling networks BMC Systems biology 9(45), 9 pages (2015)
  9. Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T, Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks BMC Systems biology 9(14), 13 pages (2015)
  10. Hasegawa T, Mori T, Yamaguchi T, Imoto S, Miyano S, Akutsu T, An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data Journal of Computational Biology 21(11), 785-798 (2014)
  11. Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E, Akutsu T, A clique-based method using dynamic programming for computing edit distance between unordered trees Journal of Computational Biology 19(10), 1089-1104 (2012)

Update: Jun 28,2018