Academic career
| 2008 (H20) Aug 01 - : Assistant Professor, Ph.D.
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| Bioknowledge Systems Laboratory (Kanehisa Laboratory),
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| Bioinformatics Centre, Institute for Chemical Research, Kyoto University.
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| 2005 (H17) Apr 01 - 2008 (H20) Jul 31: Ph.D. Research Fellow
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| Laboratory of Neurochemistry, Enzymology and Systems Biology (Keith Tipton Laboratory),
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| School of Biochemistry and Immunology, Faculty of Engineering, Mathematics and Science, Trinity College Dublin, IRELAND.
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| 2004 (H16) Apr 01 - 2005 (H17) Mar 31: Associate Instructor
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| Bioknowledge Systems Laboratory (Kanehisa Laboratory),
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| Bioinformatics Centre, Institute for Chemical Research, Kyoto University.
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| 2001 (H13) Apr 01 - 2004 (H16) Mar 31: Graduate student (Ph.D course)
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| Bioknowledge Systems Laboratory (Kanehisa Laboratory),
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| Department of Biophysics, Division of Biological Science, Graduate School of Science, Kyoto University.
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| 1999 (H11) Apr 01 - 2001 (H13) Mar 31: Graduate student (Master course)
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| Laboratory of Plant Physiology (Izui Laboratory),
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| Department of Responses to Environmental Signals and Stresses, Division of Integrated Life Science, Graduate School of Biostudies, Kyoto University.
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| 1995 (H7) Apr 01 - 1999 (H11) Mar 31: Undergraduate student
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| Graduation thesis in: Bio-Organic Chemistry Laboratory (Tamiaki Laboratory),
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| Department of Bioscience and Biotechnology, Section of Applied Chemistry, The Institute of Science and Engineering, Ritsumeikan University. | |
Research field
Bioinformatics, Cheminformatics
Current research
- Enzyme reactions, drug metabolism, xenobiotic degradation, phytochemical compounds, microarray analysis, and drinking whiskey.
Selected publications
- Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa, E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs
- Masaaki Kotera, Andrew G. McDonald, Sinéad Boyce, Keith F. Tipton, Eliciting Possible Reaction Equations and Metabolic Pathways Involving Orphan Metabolites
- Masaaki Kotera, Andrew G. McDonald, Sinéad Boyce, Keith F. Tipton, Functional Group and Substructure Searching as a Tool in Metabolomics PLoS ONE 3,
- Akiko Takahashi-Terada, Masaaki Kotera, Kenta Ohshima, Tsuyoshi Furumoto, Hiroyoshi Matsumura, Yasushi Kai, Katsura Izui, Maize Phosphoenolpyruvate Carboxylase. Mutations at the Putative Binding Site for Glucose 6-phosphate Caused Desensitization and Abolished Responsiveness to Regulatory Phosphorylation J. Biol. Chem. 280, 11798-11806 (2005)
- Masaaki Kotera, Yasushi Okuno, Masahiro Hattori, Susumu Goto, Minoru Kanehisa, Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions J. Am. Chem. Soc. 126, 16487-16498 (2004)
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