Academic career
| 2005.3 Received Doctor of Informatics from Kyoto University
| |
| 2005.4 Assistant professor, Kyoto University | |
Research field
Algorithm and Bioinformatics
Current research
Selected publications
- Zhao, Y.; Hayashida, M.; Nacher, J. C.; Nagamochi, H.; Akutsu, T., Protein complex prediction via improved verification methods using constrained domain-domain matching International Journal of Bioinformatics Research and Applications 8, 210-227 (2012)
- Hayashida, M.; Ruan, P.; Akutsu, T., A quadsection algorithm for grammar-based image compression Integrated Computer-Aided Engineering 19, 23-38 (2012)
- Hayashida, M.; Akutsu, T, Measuring the similarity of protein structures using image compression algorithms IEICE Transactions on Information and Systems E94-D, 2468-2478 (2011)
- Hayashida, M.; Kamada, M.; Song, J.; Akutsu, T., Conditional random field approach to prediction of protein-protein interactions using domain information BMC Systems Biology 5, S8 (2011)
- Zhao, Y.; Hayashida, M.; Akutsu, T., Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures BMC Bioinformatics 11, S4 (2011)
- Hayashida M, Akutsu T., Comparing biological networks via graph compression. BMC Syst Biol 4 Suppl 2, S13 (2010) [pubmed]
- Nacher JC, Hayashida M, Akutsu T., The role of internal duplication in the evolution of multi-domain proteins. Biosystems 101, 127-35 (2010) [pubmed]
- Hayashida M, Tamura T, Akutsu T, Ching WK, Cong Y., Distribution and enumeration of attractors in probabilistic Boolean networks. IET Syst Biol 3, 465-74 (2009) [pubmed]
- Nacher JC, Ochiai T, Hayashida M, Akutsu T, A mathematical model for generating bipartite graphs and its application to protein networks Journal of Physics A: Mathematical and Theoretical 42, 485005 (2009)
- Nacher JC, Hayashida M, Akutsu T., Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs. Biosystems 95, 155-9 (2009) [pubmed]
- Hayashida M, Sun F, Aburatani S, Horimoto K, Akutsu T., Integer programming-based approach to allocation of reporter genes for cell array analysis. Int J Bioinform Res Appl 4, 385-99 (2008) [pubmed]
- Hayashida M, Tamura T, Akutsu T, Zhang SQ, Ching WK., Algorithms and complexity analyses for control of singleton attractors in Boolean networks. EURASIP J Bioinform Syst Biol 521407 (2008) [pubmed]
- Morihiro Hayashida, Tatsuya Akutsu and Hiroshi Nagamochi , A clustering method for analysis of sequence similarity networks of proteins using maximal components of graphs IPSJ Transactions on Bioinformatics 49, 15-24 (2008)
- Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu, Topological aspects of protein networks Studies in Computational Intelligence 56, 147-158 (2007)
- Zhang SQ, Hayashida M, Akutsu T, Ching WK, Ng MK., Algorithms for finding small attractors in Boolean networks. EURASIP J Bioinform Syst Biol 20180 (2007) [pubmed]
- Akutsu T, Hayashida M, Ching WK, Ng MK., Control of Boolean networks: hardness results and algorithms for tree structured networks. J Theor Biol 244, 670-9 (2007) [pubmed]
- Hayashida M, Ueda N, Akutsu T., Inferring strengths of protein-protein interactions from experimental data using linear programming. Bioinformatics 19 Suppl 2, II58-II65 (2003) [pubmed]
- Hayashida M, Ueda N, Akutsu T., A simple method for inferring strengths of protein-protein interactions. Genome Inform Ser Workshop Genome Inform 15, 56-68 (2004) [pubmed]
- Nacher J.C., Hayashida M., Akutsu T., Protein domain networks: Scale-free mixing of positive and negative exponents Physica A 367, 538-552 (2006)
- Akutsu T, Hayashida M, Ching WK, Ng MK., Control of Boolean networks: hardness results and algorithms for tree structured networks. J Theor Biol 244, 670-9 (2007) [pubmed]
- Akutsu T., Hayashida M., Bahadur D.K.C., Tomita E., Suzuki J., Horimoto K. , Dynamic programming and clique based approaches for protein threading with profiles and constraints IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences E89-A, 1215-1222 (2006)
- Sato I., Hayashida M., Kai F., Sato Y., Ikeuchi K. , Fast image synthesis of virtual objects in a real scene with natural shadings Systems and Computers in Japan 36, 102-111 (2005)
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